Transcript: ENST00000409149.3 SLC38A11-003

Description

solute carrier family 38, member 11 [Source:HGNC Symbol;Acc:26836]

Gene Synonyms

AVT2, FLJ39822

Location

Chromosome 2: 165,754,839-165,811,996 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 16 domains and features, is associated with 22852 variant alleles and maps to 405 oligo probes.

Gene

This transcript is a product of gene ENSG00000169507.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000409149.3	SLC38A11-003	1621	406aa	ENSP00000386272.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56142	Q08AI6	NM_001199148.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000303735.4	SLC38A11-001	3737	384aa	ENSP00000306178.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2224	Q08AI6	NM_173512.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409058.1	SLC38A11-002	1647	437aa	ENSP00000387345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZ86	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409662.1	SLC38A11-009	1542	406aa	ENSP00000386774.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56142	Q08AI6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000424914.1	SLC38A11-010	452	150aa	ENSP00000401448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1P1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000493887.1	SLC38A11-005	577	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483641.1	SLC38A11-007	786	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492134.1	SLC38A11-004	785	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470576.1	SLC38A11-008	696	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465898.1	SLC38A11-006	683	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,621 bps, Translation length: 406 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q08AI6

CCDS

This transcript is a member of the Human CCDS set: CCDS56142

Version

ENST00000409149.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000333390 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000409149.3 SLC38A11-003

Summary