Transcript: ENST00000473751.1 PROCA1-009

Description

protein interacting with cyclin A1 [Source:HGNC Symbol;Acc:28600]

Gene Synonyms

MGC39650

Location

Chromosome 17: 27,031,026-27,038,700 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 4015 variant alleles and maps to 282 oligo probes.

Gene

This transcript is a product of gene ENSG00000167525.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000301039.2	PROCA1-001	1566	336aa	ENSP00000301039.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11239	K7ESJ9 Q8NCQ7	NM_152465.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439862.3	PROCA1-201	1439	338aa	ENSP00000411400.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G5E9R8 K7ESJ9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415329.2	PROCA1-007	811	110aa	ENSP00000468747.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ESJ9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581289.1	PROCA1-006	766	41aa	ENSP00000464600.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QSA8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473751.1	PROCA1-009	848	152aa	ENSP00000463898.1	Nonsense mediated decay		J3QQU2	-	-
ENST00000579650.1	PROCA1-003	1007	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584073.1	PROCA1-005	726	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000422880.2	PROCA1-002	565	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000578097.1	PROCA1-008	527	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495203.1	PROCA1-004	3168	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 848 bps, Translation length: 152 residues

Version

ENST00000473751.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000446803 (version 1)

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Transcript: ENST00000473751.1 PROCA1-009

Summary