Transcript: ENST00000449850.1 KDM1B-004

Description

lysine (K)-specific demethylase 1B [Source:HGNC Symbol;Acc:21577]

Gene Synonyms

AOF1, C6orf193, FLJ33898, FLJ34109, FLJ43328, LSD2, bA204B7.3, dJ298J15.2

Location

Chromosome 6: 18,186,019-18,222,346 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 15 domains and features, is associated with 17499 variant alleles and maps to 372 oligo probes.

Gene

This transcript is a product of gene ENSG00000165097.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000297792.5	KDM1B-002	3811	590aa	ENSP00000297792.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34343	Q08EI0 Q8NB78	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000388870.2	KDM1B-201	4574	823aa	ENSP00000373522.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KPL2 Q08EI0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397244.1	KDM1B-202	3878	591aa	ENSP00000380419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F2Z2A7 Q08EI0	NM_153042.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449850.1	KDM1B-004	2045	640aa	ENSP00000405669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q08EI0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000546309.2	KDM1B-003	496	113aa	ENSP00000442670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q08EI0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,045 bps, Translation length: 640 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000449850.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000277082 (version 1)

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Transcript: ENST00000449850.1 KDM1B-004

Summary