Transcript: ENST00000519806.1 ZMAT4-009

Description

zinc finger, matrin-type 4 [Source:HGNC Symbol;Acc:25844]

Gene Synonyms

FLJ13842

Location

Chromosome 8: 40,531,883-40,554,856 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 10246 variant alleles and maps to 75 oligo probes.

Gene

This transcript is a product of gene ENSG00000165061.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000297737.6	ZMAT4-002	2466	229aa	ENSP00000297737.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34885	E5RIF5 Q9H898	NM_024645.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000315769.7	ZMAT4-001	2250	153aa	ENSP00000319785.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47848	Q9H898	NM_001135731.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519406.1	ZMAT4-003	690	211aa	ENSP00000428423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIF5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000523188.1	ZMAT4-007	564	61aa	ENSP00000430050.1	Nonsense mediated decay		E5RGZ7	-	-
ENST00000523542.1	ZMAT4-005	515	46aa	ENSP00000427918.1	Nonsense mediated decay		E5RFW2	-	-
ENST00000522623.1	ZMAT4-006	473	46aa	ENSP00000429068.1	Nonsense mediated decay		E5RFW2	-	-
ENST00000523823.1	ZMAT4-004	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519806.1	ZMAT4-009	661	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000518242.1	ZMAT4-008	590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 661 bps,

Version

ENST00000519806.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000376952 (version 1)

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Transcript: ENST00000519806.1 ZMAT4-009

Summary