Transcript: ENST00000564377.1 PRICKLE2-003

Description

prickle homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:20340]

Gene Synonyms

DKFZp686D143, EPM5

Location

About this transcript

This transcript has 9 exons, is annotated with 26 domains and features, is associated with 159783 variant alleles and maps to 354 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295902.6	PRICKLE2-001	8305	844aa	ENSP00000295902.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2902	C9JY03 Q7Z3G6	NM_198859.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564377.1	PRICKLE2-003	4242	900aa	ENSP00000455004.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JY03 H3BNU0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000498162.1	PRICKLE2-002	573	150aa	ENSP00000419951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JY03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000569824.1	PRICKLE2-004	524	140aa	ENSP00000456173.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BRB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 4,242 bps, Translation length: 900 residues

Version

ENST00000564377.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000431928 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.