Transcript: ENST00000466489.1 PMF1-008

Description

polyamine-modulated factor 1 [Source:HGNC Symbol;Acc:9112]

Gene Synonyms

PMF1

Location

Chromosome 1: 156,182,796-156,203,443 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 3 domains and features, is associated with 9196 variant alleles and maps to 157 oligo probes.

Gene

This transcript is a product of gene ENSG00000160783.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000567140.1	PMF1-202	672	220aa	ENSP00000458021.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55650	Q6P1K2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368277.3	PMF1-001	1068	205aa	ENSP00000357260.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30886	D3DVB3 Q6P1K2	NM_007221.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368279.3	PMF1-002	1019	180aa	ENSP00000357262.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55649	Q6P1K2	NM_001199653.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368273.4	PMF1-005	884	207aa	ENSP00000357256.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55648	Q6P1K2	NM_001199654.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000565805.1	PMF1-201	537	175aa	ENSP00000455571.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55651	Q6P1K2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466489.1	PMF1-008	933	87aa	ENSP00000476770.1	Nonsense mediated decay		-	-	-
ENST00000497069.2	PMF1-004	837	93aa	ENSP00000476760.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000606952.1	PMF1-010	1275	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 2, Transcript length: 933 bps, Translation length: 87 residues

Version

ENST00000466489.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000335578 (version 2)

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Transcript: ENST00000466489.1 PMF1-008

Summary