Transcript: ENST00000517378.1 CDH12-004

Description

cadherin 12, type 2 (N-cadherin 2) [Source:HGNC Symbol;Acc:1751]

Gene Synonyms

Br-cadherin, CDHB

Location

Chromosome 5: 21,751,846-22,212,878 reverse strand.

About this transcript

This transcript has 12 exons, is associated with 209084 variant alleles and maps to 643 oligo probes.

Gene

This transcript is a product of gene ENSG00000154162.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382254.1	CDH12-001	4164	794aa	ENSP00000371689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3890	B3KRT0 P55289	NM_004061.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504376.2	CDH12-002	4160	794aa	ENSP00000423577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3890	B3KRT0 P55289	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522262.1	CDH12-003	3028	754aa	ENSP00000428786.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KRT0 B7Z2U6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521384.1	CDH12-005	2164	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518209.1	CDH12-006	666	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521745.1	CDH12-008	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520668.1	CDH12-007	539	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000517378.1	CDH12-004	2843	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 0, Transcript length: 2,843 bps,

Version

ENST00000517378.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000375799 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000517378.1 CDH12-004

Summary