Transcript: ENST00000459673.1 CDHR1-003

Description

cadherin-related family member 1 [Source:HGNC Symbol;Acc:14550]

Gene Synonyms

CORD15, KIAA1775, PCDH21, PRCAD, RP65

Location

About this transcript

This transcript has 2 exons, is associated with 2250 variant alleles and maps to 245 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372117.3	CDHR1-001	5428	859aa	ENSP00000361189.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7372	F1T0L2 Q96JP9	NM_033100.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440770.2	CDHR1-201	4537	563aa	ENSP00000415980.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EN47	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000332904.3	CDHR1-002	2690	745aa	ENSP00000331063.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53548	Q96JP9	NM_001171971.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000459673.1	CDHR1-003	3757	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 3,757 bps,

Version

ENST00000459673.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000049113 (version 1)