Transcript: ENST00000566480.1 SCAMP2-003

Description

secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:10564]

Location

Chromosome 15: 75,136,073-75,146,927 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 4822 variant alleles and maps to 519 oligo probes.

Gene

This transcript is a product of gene ENSG00000140497.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268099.9	SCAMP2-001	2453	329aa	ENSP00000268099.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10271	H3BMN2 O15127	NM_005697.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566480.1	SCAMP2-003	2476	278aa	ENSP00000455377.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KU14 H3BMN2 H3BPL9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000564529.1	SCAMP2-007	866	254aa	ENSP00000457564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BUB6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565345.1	SCAMP2-009	790	93aa	ENSP00000454464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMN2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562363.1	SCAMP2-008	638	194aa	ENSP00000457890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BV04	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563663.1	SCAMP2-004	1787	57aa	ENSP00000455963.1	Nonsense mediated decay		H3BQW2	-	-
ENST00000569904.1	SCAMP2-012	858	236aa	ENSP00000454741.1	Nonsense mediated decay		H3BN93	-	-
ENST00000563829.1	SCAMP2-005	3162	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569251.1	SCAMP2-013	867	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567638.1	SCAMP2-010	678	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566557.1	SCAMP2-011	585	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569124.1	SCAMP2-006	538	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,476 bps, Translation length: 278 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000566480.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000421717 (version 1)

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Transcript: ENST00000566480.1 SCAMP2-003

Summary