Transcript: ENST00000468516.1 FOXN4-005

Description

forkhead box N4 [Source:HGNC Symbol;Acc:21399]

Location

Chromosome 12: 109,715,784-109,724,528 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 11 domains and features, is associated with 4239 variant alleles and maps to 214 oligo probes.

Gene

This transcript is a product of gene ENSG00000139445.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299162.5	FOXN4-001	3350	517aa	ENSP00000299162.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9126	Q96NZ1	NM_213596.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355216.1	FOXN4-002	2958	337aa	ENSP00000347354.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96NZ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468516.1	FOXN4-005	1593	84aa	ENSP00000474754.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000423960.1	FOXN4-004	1219	218aa	ENSP00000408085.1	Nonsense mediated decay		Q96NZ1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,593 bps, Translation length: 84 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000468516.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs2075438, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HAPMAP-MKK.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000328309 (version 2)

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Transcript: ENST00000468516.1 FOXN4-005

Summary