Transcript: ENST00000496477.1 ITGAV-005

Description

integrin, alpha V [Source:HGNC Symbol;Acc:6150]

Gene Synonyms

CD51, MSK8, VNRA, VTNR

Location

Chromosome 2: 187,532,375-187,540,365 forward strand.

About this transcript

This transcript has 4 exons, is associated with 3587 variant alleles and maps to 141 oligo probes.

Gene

This transcript is a product of gene ENSG00000138448.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261023.3	ITGAV-001	7030	1048aa	ENSP00000261023.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2292	L7RXH0 P06756	NM_002210.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374907.3	ITGAV-003	6903	1012aa	ENSP00000364042.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46470	P06756	NM_001145000.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433736.2	ITGAV-004	3288	1002aa	ENSP00000404291.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46471	P06756	NM_001144999.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430709.1	ITGAV-008	736	136aa	ENSP00000389442.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000474571.1	ITGAV-011	333	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496854.1	ITGAV-007	611	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460641.1	ITGAV-006	604	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496477.1	ITGAV-005	437	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 437 bps,

Version

ENST00000496477.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000334605 (version 2)

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Transcript: ENST00000496477.1 ITGAV-005

Summary