Transcript: ENST00000473214.1 RTF1-003

Description

Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28996]

Gene Synonyms

GTL7, KIAA0252

Location

Chromosome 15: 41,766,785-41,769,447 forward strand.

About this transcript

This transcript has 5 exons, is associated with 1051 variant alleles and maps to 204 oligo probes.

Gene

This transcript is a product of gene ENSG00000137815.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389629.4	RTF1-001	5021	710aa	ENSP00000374280.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32200	I7GPQ7 Q92541	NM_015138.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560447.1	RTF1-007	551	171aa	ENSP00000452973.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000462276.1	RTF1-002	485	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558298.1	RTF1-004	327	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558117.1	RTF1-005	552	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473214.1	RTF1-003	475	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561076.1	RTF1-006	314	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 475 bps,

Version

ENST00000473214.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000334008 (version 1)

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Transcript: ENST00000473214.1 RTF1-003

Summary