Transcript: ENST00000373474.4 LMX1B-002

Description

LIM homeobox transcription factor 1, beta [Source:HGNC Symbol;Acc:6654]

Gene Synonyms

LMX1.2, NPS1, RP11-489N22.3

Location

Chromosome 9: 129,376,722-129,458,828 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 25 domains and features, is associated with 38219 variant alleles and maps to 314 oligo probes.

Gene

This transcript is a product of gene ENSG00000136944.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355497.5	LMX1B-201	5809	406aa	ENSP00000347684.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55343	B7ZLH2 O60663 Q9UE66	NM_001174146.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425646.2	LMX1B-202	5776	372aa	ENSP00000390923.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O60663 Q9UE66	NM_002316.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373474.4	LMX1B-002	1314	402aa	ENSP00000362573.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55342	O60663 Q6ISE0 Q9UE66	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561065.1	LMX1B-003	1300	383aa	ENSP00000453580.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZLH2 Q9UE66	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526117.1	LMX1B-001	1195	395aa	ENSP00000436930.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6866	O60663 Q9UE66	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,314 bps, Translation length: 402 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60663

CCDS

This transcript is a member of the Human CCDS set: CCDS55342

Version

ENST00000373474.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000054123 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000373474.4 LMX1B-002

Summary