Transcript: ENST00000441564.3 PSD4-003

Description

pleckstrin and Sec7 domain containing 4 [Source:HGNC Symbol;Acc:19096]

Gene Synonyms

EFA6B, TIC

Location

Chromosome 2: 113,931,574-113,966,973 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 22 domains and features, is associated with 15510 variant alleles and maps to 918 oligo probes.

Gene

This transcript is a product of gene ENSG00000125637.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000245796.6	PSD4-001	5188	1056aa	ENSP00000245796.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33276	B3KN27 Q8NDX1	NM_012455.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441564.3	PSD4-003	11234	1027aa	ENSP00000413997.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8NDX1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409378.1	PSD4-010	580	178aa	ENSP00000386606.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B8ZZZ5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000409656.1	PSD4-004	2394	41aa	ENSP00000386373.1	Nonsense mediated decay		H7BZ06	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000465917.1	PSD4-012	910	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485525.1	PSD4-007	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000418251.2	PSD4-002	5600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460725.1	PSD4-005	2763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464559.1	PSD4-006	2424	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487574.1	PSD4-009	670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493329.1	PSD4-008	606	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465592.1	PSD4-011	548	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 11,234 bps, Translation length: 1,027 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8NDX1

Version

ENST00000441564.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000330791 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000441564.3 PSD4-003

Summary