Transcript: ENST00000538142.1 SSPN-007

Description

sarcospan [Source:HGNC Symbol;Acc:11322]

Gene Synonyms

DAGA5, KRAG, NSPN, SPN1, SPN2

Location

Chromosome 12: 26,274,924-26,383,947 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 4 domains and features, is associated with 45044 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSG00000123096.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000242729.2	SSPN-001	2788	243aa	ENSP00000242729.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8707	F5H381 Q14714	NM_005086.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422622.2	SSPN-003	2503	140aa	ENSP00000396087.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44850	F5H381 Q14714	NM_001135823.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540266.1	SSPN-009	587	140aa	ENSP00000442893.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44850	F5H381 Q14714	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538142.1	SSPN-007	553	120aa	ENSP00000445360.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H381	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535504.1	SSPN-008	419	128aa	ENSP00000438801.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0K2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539019.1	SSPN-002	1356	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000544231.1	SSPN-006	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000534829.1	SSPN-005	380	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 553 bps, Translation length: 120 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000538142.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000402717 (version 1)

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Transcript: ENST00000538142.1 SSPN-007

Summary