Transcript: ENST00000466745.1 SFPQ-008

Description

splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:10774]

Gene Synonyms

POMP100, PSF

Location

Chromosome 1: 35,641,981-35,644,706 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 1464 variant alleles and maps to 182 oligo probes.

Gene

This transcript is a product of gene ENSG00000116560.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000357214.5	SFPQ-001	3747	707aa	ENSP00000349748.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS388	P23246 Q9BSV4	NM_005066.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470472.1	SFPQ-002	874	223aa	ENSP00000424440.1	Nonsense mediated decay		H0Y9K7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000460428.1	SFPQ-003	464	88aa	ENSP00000425071.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000468598.1	SFPQ-004	2835	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466213.1	SFPQ-005	1431	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485365.1	SFPQ-007	693	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466745.1	SFPQ-008	662	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471991.1	SFPQ-009	440	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490668.1	SFPQ-010	434	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485454.1	SFPQ-006	339	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 662 bps,

Version

ENST00000466745.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000012076 (version 1)

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Transcript: ENST00000466745.1 SFPQ-008

Summary