Transcript: ENST00000563651.1 MSLN-008

Description

mesothelin [Source:HGNC Symbol;Acc:7371]

Gene Synonyms

CAK1, MPF, SMRP

Location

Chromosome 16: 811,098-816,429 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 8 domains and features, is associated with 3712 variant alleles and maps to 352 oligo probes.

Gene

This transcript is a product of gene ENSG00000102854.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000382862.3	MSLN-001	2116	630aa	ENSP00000372313.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32356	H3BV92 Q13421	NM_013404.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566549.1	MSLN-002	2418	622aa	ENSP00000456702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45370	H3BV92 Q13421	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545450.2	MSLN-004	2162	622aa	ENSP00000442965.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45370	H3BV92 Q13421	NM_005823.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563941.1	MSLN-003	2109	622aa	ENSP00000456008.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45370	H3BV92 Q13421	NM_001177355.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561896.1	MSLN-006	1195	398aa	ENSP00000457847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BUX1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000563651.1	MSLN-008	1084	332aa	ENSP00000456132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BR90 H3BV92	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566269.2	MSLN-005	1068	334aa	ENSP00000454295.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569566.1	MSLN-007	553	171aa	ENSP00000458003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BV92	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,084 bps, Translation length: 332 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000563651.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000420615 (version 1)

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Transcript: ENST00000563651.1 MSLN-008

Summary