Transcript: ENST00000466635.1 SYP-008

Description

synaptophysin [Source:HGNC Symbol;Acc:11506]

Gene Synonyms

MRXSYP

Location

Chromosome X: 49,050,768-49,056,652 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 1862 variant alleles and maps to 123 oligo probes.

Gene

This transcript is a product of gene ENSG00000102003.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263233.4	SYP-001	2486	313aa	ENSP00000263233.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14321	B7Z359 P08247	NM_003179.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479808.1	SYP-004	1850	313aa	ENSP00000418169.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14321	B7Z359 P08247	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538567.1	SYP-201	870	195aa	ENSP00000437456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z359	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000472598.1	SYP-002	761	203aa	ENSP00000418387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000376303.2	SYP-003	858	40aa	ENSP00000365480.2	Nonsense mediated decay		G5E9A2	-	-
ENST00000469389.1	SYP-009	581	118aa	ENSP00000418987.1	Nonsense mediated decay		F2Z3E1	-	-
ENST00000466635.1	SYP-008	513	118aa	ENSP00000420774.1	Nonsense mediated decay		F2Z3E1	-	-
ENST00000494396.1	SYP-005	2062	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472737.1	SYP-007	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 513 bps, Translation length: 118 residues

Version

ENST00000466635.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000357752 (version 1)

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Transcript: ENST00000466635.1 SYP-008

Summary