Transcript: ENST00000476656.1 COL19A1-005

Description

collagen, type XIX, alpha 1 [Source:HGNC Symbol;Acc:2196]

Gene Synonyms

COL9A1L, D6S228E

Location

Chromosome 6: 70,577,441-70,601,112 forward strand.

About this transcript

This transcript has 3 exons, is associated with 9713 variant alleles and maps to 74 oligo probes.

Gene

This transcript is a product of gene ENSG00000082293.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000322773.4	COL19A1-001	6232	1142aa	ENSP00000316030.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4970	Q14993	NM_001858.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393344.1	COL19A1-002	5023	764aa	ENSP00000377013.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455415.1	COL19A1-003	256	36aa	ENSP00000416556.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JVU1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476656.1	COL19A1-005	1515	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483745.1	COL19A1-006	550	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478620.1	COL19A1-004	349	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,515 bps,

Version

ENST00000476656.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000313651 (version 1)

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Transcript: ENST00000476656.1 COL19A1-005

Summary