Transcript: ENST00000573852.1 SCARF1-005

Description

scavenger receptor class F, member 1 [Source:HGNC Symbol;Acc:16820]

Gene Synonyms

KIAA0149, SREC, SREC-I, SREC1

Location

Chromosome 17: 1,537,899-1,549,006 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 2 domains and features, is associated with 6438 variant alleles and maps to 621 oligo probes.

Gene

This transcript is a product of gene ENSG00000074660.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263071.4	SCARF1-001	3443	830aa	ENSP00000263071.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11007	Q14162	NM_145350.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348987.3	SCARF1-201	3185	744aa	ENSP00000323964.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q14162	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000571272.1	SCARF1-002	2871	569aa	ENSP00000458174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45564	Q14162	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434376.2	SCARF1-008	3342	342aa	ENSP00000411167.2	Nonsense mediated decay		Q14162	-	-
ENST00000573852.1	SCARF1-005	2698	49aa	ENSP00000461468.1	Nonsense mediated decay		I3L4R9	-	-
ENST00000574545.1	SCARF1-006	894	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000576012.1	SCARF1-004	3292	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570902.1	SCARF1-007	1060	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573867.1	SCARF1-010	939	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 2, Transcript length: 2,698 bps, Translation length: 49 residues

Version

ENST00000573852.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438464 (version 1)

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Transcript: ENST00000573852.1 SCARF1-005

Summary