Transcript: ENST00000370096.3 COL11A1-001

Description

collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:2186]

Gene Synonyms

CO11A1, COLL6, STL2

Location

Chromosome 1: 103,342,023-103,574,047 reverse strand.

About this transcript

This transcript has 67 exons, is annotated with 39 domains and features, is associated with 111089 variant alleles and maps to 1849 oligo probes.

Gene

This transcript is a product of gene ENSG00000060718.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370096.3	COL11A1-001	7286	1806aa	ENSP00000359114.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS778	B4DQZ0 P12107 Q4FAC4	NM_001854.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358392.2	COL11A1-202	7327	1818aa	ENSP00000351163.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DQZ0 C9JMN2 P12107	NM_080629.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000353414.4	COL11A1-201	7174	1767aa	ENSP00000302551.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53348	B4DQZ0 P12107	NM_001190709.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512756.1	COL11A1-008	5442	1690aa	ENSP00000426533.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS780	B4DQZ0 P12107 Q4FAC4	NM_080630.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427239.1	COL11A1-002	1709	569aa	ENSP00000408640.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JMN2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447608.1	COL11A1-003	776	200aa	ENSP00000410177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C381	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461720.1	COL11A1-004	678	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475980.1	COL11A1-005	377	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470170.1	COL11A1-007	785	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000465209.1	COL11A1-006	297	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 67, Coding exons: 67, Transcript length: 7,286 bps, Translation length: 1,806 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P12107

CCDS

This transcript is a member of the Human CCDS set: CCDS778

Version

ENST00000370096.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000029997 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000370096.3 COL11A1-001

Summary