Transcript: ENST00000262103.3 EFCAB1-001

Description

EF-hand calcium binding domain 1 [Source:HGNC Symbol;Acc:25678]

Gene Synonyms

FLJ11767

Location

Chromosome 8: 49,635,967-49,647,791 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 21 domains and features, is associated with 5788 variant alleles and maps to 543 oligo probes.

Gene

This transcript is a product of gene ENSG00000034239.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262103.3	EFCAB1-001	2051	211aa	ENSP00000262103.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6145	Q9HAE3	NM_024593.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433756.1	EFCAB1-201	2286	159aa	ENSP00000400873.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47853	H9KVD9 Q9HAE3	NM_001142857.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523092.1	EFCAB1-008	648	159aa	ENSP00000430765.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47853	H9KVD9 Q9HAE3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522254.1	EFCAB1-006	639	129aa	ENSP00000430940.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000523008.1	EFCAB1-010	613	78aa	ENSP00000429644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000521701.1	EFCAB1-007	920	54aa	ENSP00000430374.1	Nonsense mediated decay		H9KVD9	-	-
ENST00000521002.1	EFCAB1-002	1661	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521721.1	EFCAB1-009	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519425.1	EFCAB1-004	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,051 bps, Translation length: 211 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9HAE3

CCDS

This transcript is a member of the Human CCDS set: CCDS6145

Version

ENST00000262103.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000377778 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000262103.3 EFCAB1-001

Summary