Transcript: ENST00000461861.1 PHF7-011

Description

PHD finger protein 7 [Source:HGNC Symbol;Acc:18458]

Gene Synonyms

HSPC045, HSPC226, NYD-SP6

Location

Chromosome 3: 52,448,539-52,457,656 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 7 domains and features, is associated with 3973 variant alleles and maps to 365 oligo probes.

Gene

This transcript is a product of gene ENSG00000010318.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000327906.3	PHF7-001	2130	381aa	ENSP00000333024.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2854	C9J4W0 Q9BWX1	NM_016483.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000347025.2	PHF7-004	1472	342aa	ENSP00000246282.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2855	C9J4W0 Q9BWX1	NM_001278221.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000461861.1	PHF7-011	1303	326aa	ENSP00000417712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000465863.1	PHF7-010	494	63aa	ENSP00000420521.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000482327.1	PHF7-012	576	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472337.1	PHF7-008	387	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498509.2	PHF7-003	1727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473145.1	PHF7-007	962	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000459935.1	PHF7-009	790	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,303 bps, Translation length: 326 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000461861.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000351164 (version 1)

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Transcript: ENST00000461861.1 PHF7-011

Summary