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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: FOCAD ENSG00000188352

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Description

focadhesin [Source:HGNC Symbol;Acc:23377]

Gene Synonyms

FLJ20375, KIAA1797

Location

Chromosome 9: 20,658,308-20,995,954 forward strand.

GRCh37:CM000671.1

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380249.1	FOCAD-001	6096	1801aa	ENSP00000369599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34993	Q5VW36 S4R3S9 S4R400 S4R450	NM_017794.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338382.6	FOCAD-201	5725	1801aa	ENSP00000344307.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34993	Q5VW36 S4R3S9 S4R400 S4R450	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000605086.1	FOCAD-002	4195	1237aa	ENSP00000474915.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3S9 S4R400 S4R450	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000603044.1	FOCAD-012	635	128aa	ENSP00000475075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3S9 S4R450	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000604254.1	FOCAD-013	572	180aa	ENSP00000474563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3N8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000603695.1	FOCAD-014	559	99aa	ENSP00000474683.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R3S9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000603648.1	FOCAD-003	592	46aa	ENSP00000475030.1	Nonsense mediated decay		S4R437	-	-
ENST00000604828.1	FOCAD-005	1973	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000603844.1	FOCAD-004	693	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000603631.1	FOCAD-015	672	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000604103.1	FOCAD-007	591	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000603492.1	FOCAD-009	569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000605031.1	FOCAD-006	556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000605852.1	FOCAD-011	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000603552.1	FOCAD-010	534	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000604036.1	FOCAD-008	522	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000603610.1	FOCAD-016	214	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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