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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CCDC39 ENSG00000145075

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Description

coiled-coil domain containing 39 [Source:HGNC Symbol;Acc:25244]

Gene Synonyms

CILD14, DKFZp434A128, FAP59

Location

Chromosome 3: 180,320,646-180,588,793 reverse strand.

GRCh37:CM000665.1

About this gene

This gene has 8 transcripts (splice variants) and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000442201.2	CCDC39-001	3279	941aa	ENSP00000405708.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46964	Q9UFE4	NM_181426.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000273654.4	CCDC39-201	4450	755aa	ENSP00000273654.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8WBW2 Q9UFE4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000471307.2	CCDC39-003	783	97aa	ENSP00000418702.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9IZC4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489868.1	CCDC39-007	534	67aa	ENSP00000420025.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C5I6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000473854.1	CCDC39-006	487	102aa	ENSP00000418482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000476379.1	CCDC39-002	4451	671aa	ENSP00000417960.1	Nonsense mediated decay		F8WBW2	-	-
ENST00000485055.1	CCDC39-004	2874	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495817.1	CCDC39-005	1047	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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