Description
target of myb1 (chicken)-like 1 [Source:HGNC Symbol;Acc:11983]
Gene Synonyms
OK/KNS-CL.3, SRCASM
Location
Chromosome 17: 52,976,748-53,039,310 forward strand.
GRCh37:CM000679.1
About this gene
This gene has 24 transcripts (splice variants) and 4 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000575882.1 | TOM1L1-001 | 2500 | 476aa | ENSP00000460823.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11582 | B7Z9E2 I3L1Q1 I3L4N3 O75674 | NM_005486.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000570371.1 | TOM1L1-022 | 2442 | 346aa | ENSP00000458553.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1Q1 I3L4N3 Q8N749 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000572405.1 | TOM1L1-004 | 2337 | 225aa | ENSP00000460721.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1Q1 I3L3T4 I3L4N3 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000445275.2 | TOM1L1-002 | 2228 | 465aa | ENSP00000408958.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1Q1 I3L4N3 J3KQU4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000348161.4 | TOM1L1-005 | 1895 | 399aa | ENSP00000343901.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z9E2 I3L1Q1 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000575333.1 | TOM1L1-009 | 1849 | 346aa | ENSP00000458918.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1Q1 I3L4N3 Q8N749 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000540336.1 | TOM1L1-201 | 1526 | 364aa | ENSP00000441242.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DUW5 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000536554.1 | TOM1L1-008 | 1522 | 399aa | ENSP00000443099.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z9E2 I3L1Q1 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000572158.1 | TOM1L1-007 | 1521 | 469aa | ENSP00000461284.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L4I4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000572576.1 | TOM1L1-014 | 754 | 252aa | ENSP00000458809.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000575909.1 | TOM1L1-016 | 708 | 229aa | ENSP00000460213.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1Q1 I3L367 I3L4N3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000570499.1 | TOM1L1-013 | 596 | 199aa | ENSP00000461215.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L4N3 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000572298.1 | TOM1L1-011 | 567 | 106aa | ENSP00000459003.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L1Q1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000573607.1 | TOM1L1-015 | 556 | 122aa | ENSP00000461396.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L4N3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000574318.1 | TOM1L1-023 | 552 | 125aa | ENSP00000467227.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000571319.1 | TOM1L1-006 | 1524 | 63aa | ENSP00000458219.1 | Nonsense mediated decay | I3L0N2 | - | - | |
| ENST00000576932.1 | TOM1L1-003 | 1252 | 326aa | ENSP00000461876.1 | Nonsense mediated decay | I3L1Q1 I3NI44 | - | - | |
| ENST00000570965.1 | TOM1L1-010 | 1026 | 38aa | ENSP00000459079.1 | Nonsense mediated decay | I3L1T2 | - | - | |
| ENST00000572360.1 | TOM1L1-012 | 576 | 92aa | ENSP00000460565.1 | Nonsense mediated decay | I3L3M3 | - | - | |
| ENST00000574744.1 | TOM1L1-020 | 559 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000574653.1 | TOM1L1-019 | 721 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000570623.1 | TOM1L1-018 | 673 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000570977.1 | TOM1L1-017 | 584 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000572905.1 | TOM1L1-021 | 537 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
