Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:10461]
Gene Synonyms
CLIP, CLIP-170, CLIP170, CYLN1, RSN
Location
Chromosome 12: 122,755,979-122,907,179 reverse strand.
GRCh37:CM000674.1
About this gene
This gene has 18 transcripts (splice variants), 7 paralogues and is associated with 62 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000540338.1 | CLIP1-003 | 4400 | 1438aa | ENSP00000439093.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58285 | F5H270 F5H367 P30622 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000358808.2 | CLIP1-201 | 5880 | 1427aa | ENSP00000351665.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9232 | F5H270 F5H367 P30622 | NM_002956.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000302528.7 | CLIP1-001 | 5833 | 1427aa | ENSP00000303585.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9232 | F5H270 F5H367 P30622 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000361654.4 | CLIP1-007 | 5568 | 1316aa | ENSP00000355314.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H270 F5H367 J3KP58 | NM_198240.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000537178.1 | CLIP1-002 | 5229 | 1392aa | ENSP00000445531.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9233 | F5H270 F5H367 P30622 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000545889.1 | CLIP1-008 | 4633 | 1013aa | ENSP00000438743.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H0N7 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000540539.1 | CLIP1-015 | 2592 | 117aa | ENSP00000437617.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H6H4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000540304.1 | CLIP1-005 | 2554 | 803aa | ENSP00000437786.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H270 F5H367 F5H6A0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000537004.1 | CLIP1-006 | 2000 | 428aa | ENSP00000441409.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H270 F5H367 F6VGP8 Q86WU4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000535290.1 | CLIP1-017 | 665 | 108aa | ENSP00000439472.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H270 F5H367 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000539080.1 | CLIP1-016 | 560 | 83aa | ENSP00000445387.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H367 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000541108.1 | CLIP1-004 | 1658 | 350aa | ENSP00000446379.1 | Nonsense mediated decay | F5H1T5 F5H270 F5H367 | - | - | |
| ENST00000536634.1 | CLIP1-013 | 929 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000514271.2 | CLIP1-011 | 3493 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000538120.1 | CLIP1-010 | 2472 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000501271.2 | CLIP1-014 | 2426 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000541410.1 | CLIP1-012 | 2379 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000543205.1 | CLIP1-009 | 2018 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
