Gene: COL12A1 ENSG00000111799

Description

collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:2188]

Gene Synonyms

BA209D8.1, COL12A1L, DJ234P15.1

Location

Chromosome 6: 75,794,042-75,915,767 reverse strand.

GRCh37:CM000668.1

About this gene

This gene has 10 transcripts (splice variants), 10 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000322507.8	COL12A1-001	11723	3063aa	ENSP00000325146.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43482	Q99715	NM_004370.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483888.2	COL12A1-003	9637	3062aa	ENSP00000421216.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGG3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416123.2	COL12A1-009	8964	2987aa	ENSP00000412864.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q99715	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000345356.6	COL12A1-002	5886	1899aa	ENSP00000305147.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43481	Q99715	NM_080645.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425443.2	COL12A1-008	3135	756aa	ENSP00000399812.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y5N9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000419671.1	COL12A1-007	1914	638aa	ENSP00000393217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000493109.2	COL12A1-006	794	207aa	ENSP00000423423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y991	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000511023.1	COL12A1-010	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486533.1	COL12A1-004	1554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474564.1	COL12A1-005	499	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

EMBL-EBI User Survey 2024

Gene: COL12A1 ENSG00000111799

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EMBL-EBI User Survey 2024

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Gene: COL12A1 ENSG00000111799

Summary