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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPN21 ENSG00000070778

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Description

protein tyrosine phosphatase, non-receptor type 21 [Source:HGNC Symbol;Acc:9651]

Gene Synonyms

PTPD1, PTPRL10

Location

Chromosome 14: 88,932,122-89,021,077 reverse strand.

GRCh37:CM000676.1

About this gene

This gene has 9 transcripts (splice variants) and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000556564.1	PTPN21-001	6166	1174aa	ENSP00000452414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9884	G3V3S6 Q16825 Q8WX29	NM_007039.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000328736.3	PTPN21-201	6089	1174aa	ENSP00000330276.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9884	G3V3S6 Q16825 Q8WX29	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555243.1	PTPN21-005	1014	195aa	ENSP00000451401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3S6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553531.1	PTPN21-008	704	128aa	ENSP00000450847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJ59	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000536337.1	PTPN21-003	3943	61aa	ENSP00000443951.1	Nonsense mediated decay		G3V1Q9	-	-
ENST00000554628.1	PTPN21-002	1571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554178.1	PTPN21-007	822	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554270.1	PTPN21-004	4008	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557249.1	PTPN21-006	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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