Description
contactin 1 [Source:HGNC Symbol;Acc:2171]
Gene Synonyms
F3, GP135
Location
Chromosome 12: 41,086,244-41,466,220 forward strand.
GRCh37:CM000674.1
About this gene
This gene has 12 transcripts (splice variants), 17 paralogues and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000551295.2 | CNTN1-001 | 5557 | 1018aa | ENSP00000447006.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8737 | F8VQW3 F8VUI8 F8VUI9 F8VX96 Q12860 | NM_001843.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000347616.1 | CNTN1-201 | 3393 | 1018aa | ENSP00000325660.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8737 | F8VQW3 F8VUI8 F8VUI9 F8VX96 Q12860 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000348761.2 | CNTN1-002 | 3328 | 1007aa | ENSP00000261160.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8738 | Q12860 | NM_175038.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000547849.1 | CNTN1-004 | 3125 | 627aa | ENSP00000448653.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58225 | F8VQW3 F8VUI8 F8VUI9 F8VX96 Q12860 | NM_001256064.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000547702.1 | CNTN1-003 | 3033 | 627aa | ENSP00000448004.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58225 | F8VQW3 F8VUI8 F8VUI9 F8VX96 Q12860 | NM_001256063.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000360099.3 | CNTN1-202 | 1963 | 627aa | ENSP00000353213.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58225 | F8VQW3 F8VUI8 F8VUI9 F8VX96 Q12860 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000552913.1 | CNTN1-006 | 572 | 72aa | ENSP00000449706.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VQW3 F8VX96 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000551424.1 | CNTN1-005 | 555 | 62aa | ENSP00000450412.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VQW3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000548005.1 | CNTN1-008 | 553 | 85aa | ENSP00000447862.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VQW3 F8VUI8 F8VX96 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000552248.1 | CNTN1-007 | 463 | 90aa | ENSP00000447860.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VQW3 F8VUI8 F8VUI9 F8VX96 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000548481.1 | CNTN1-010 | 512 | 57aa | ENSP00000449517.1 | Nonsense mediated decay | H0YIJ1 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000550305.1 | CNTN1-009 | 731 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - |
