Extracting data with BioMart
Tables of Ensembl data can be downloaded via the highly customisable BioMart data mining tool. The easy-to-use web-based tool allows extraction of data without any programming knowledge or understanding of the underlying database structure.
BioMart tutorials and FAQs
- How to use BioMart
- BioMart tutorials: BioMart short videos and written materials.
BioMart FAQs: BioMart Frequently Asked Questions.
- How can I download all the proteins in the human proteome? Do I use BioMart?
- Ensembl BioMart shows results for protein-coding genes when protein-associated attributes are chosen. Non-coding genes that pass filters will not be shown in the results if certain protein-associated attributes are chosen. Why does this occur?
- Combining multiple species datasets: Example on how to combine multiple mart datasets inside one mart or accross different marts.
BioMart R package, RESTful access and API