A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
Annotation produced by aligning human cDNA sequences to the genome using Exonerate's cdna2genome model, which utilises annotation identifying the coding regions of the cDNA sequences, along with protein evidence from UniProtKB, from various species, aligned to the genome using GeneWise. This annotation is used where there is no manual annotation and annotation could not be projected from the primary assembly.
GENCODE basic gene
This transcript is a member of the Gencode basic gene set.
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