Transcript: ENST00000506639.1 AMACR-007

Description

alpha-methylacyl-CoA racemase [Source:HGNC Symbol;Acc:451]

Gene Synonyms

AMACRD, CBAS4, RACE, RM

Location

Chromosome 5: 33,988,189-34,008,136 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 8201 variant alleles and maps to 589 oligo probes.

Gene

This transcript is a product of gene ENSG00000242110.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335606.6	AMACR-001	4153	382aa	ENSP00000334424.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3902	Q9UHK6	NM_014324.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382072.2	AMACR-002	2919	198aa	ENSP00000371504.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3903	Q9UHK6	NM_203382.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000502637.1	AMACR-003	1598	367aa	ENSP00000424351.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB81	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000426255.2	AMACR-004	1316	288aa	ENSP00000476965.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382085.3	AMACR-008	1195	394aa	ENSP00000371517.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54836	Q9UHK6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000382068.3	AMACR-006	862	281aa	ENSP00000477108.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512079.1	AMACR-005	858	260aa	ENSP00000477411.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441713.2	AMACR-201	786	229aa	ENSP00000403800.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UHK6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506639.1	AMACR-007	2182	229aa	ENSP00000427227.1	Nonsense mediated decay		Q9UHK6	-	-
ENST00000514195.1	AMACR-009	2052	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,182 bps, Translation length: 229 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UHK6

Version

ENST00000506639.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs10472909, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HapMap-YRI.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000364410 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000506639.1 AMACR-007

Summary