Transcript: ABCF1-007 ENST00000479542.1

Description

ATP-binding cassette, sub-family F (GCN20), member 1 [Source:HGNC Symbol;Acc:70]

Gene Synonyms

ABC27, ABC50, EST123147

Location

Chromosome 6: 30,557,206-30,558,520 forward strand.

About this transcript

This transcript has 4 exons, is associated with 481 variant alleles and maps to 1248 oligo probes.

Gene

This transcript is a product of gene ENSG00000204574.8 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ABCF1-001	ENST00000326195.8	3481	845aa	ENSP00000313603.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34380	F5GYK6 Q8NE71	NM_001025091 NP_001020262	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCF1-002	ENST00000376545.3	3131	807aa	ENSP00000365728.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34381	F5GYK6 Q2L6I2 Q8NE71	NM_001090 NP_001081	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCF1-201	ENST00000396515.4	1641	238aa	ENSP00000379772.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	Q5STZ7	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ABCF1-003	ENST00000441867.1	1074	339aa	ENSP00000405512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	F5GYK6 Q5STZ8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ABCF1-006	ENST00000468958.1	606	105aa	ENSP00000440893.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	F5GYK6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ABCF1-005	ENST00000475993.1	2860	596aa	ENSP00000445100.1	Nonsense mediated decay	-	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ABCF1-007	ENST00000479542.1	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
ABCF1-008	ENST00000542772.1	223	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 893 bps,

Version

ENST00000479542.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000076140 (version 2)

Favourite species

All species

Recent locations

Transcript: ABCF1-007 ENST00000479542.1

Summary

Transcript-based displays