Transcript: ENST00000300589.2 NOD2-001

Description

nucleotide-binding oligomerization domain containing 2 [Source:HGNC Symbol;Acc:5331]

Gene Synonyms

ACUG, BLAU, CARD15, CD, CLR16.3, IBD1, NLRC2, NOD2B, PSORAS1

Location

Chromosome 16: 50,731,050-50,766,988 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 36 domains and features, is associated with 15591 variant alleles and maps to 567 oligo probes.

Gene

This transcript is a product of gene ENSG00000167207.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000300589.2	NOD2-001	4486	1040aa	ENSP00000300589.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10746	A3FA72 A7J384 A7KZQ9 A7KZR0 B5A7D5 B5B2Z4 B5B2Z5 B5B2Z6 D6CHF9 D9N2T7 E9PK30 Q6TDC3 Q7Z596 Q7Z597 Q9HC29	NM_022162.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531674.1	NOD2-004	624	146aa	ENSP00000431681.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A3FA72 E9PK30 Q6TDC3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534057.1	NOD2-010	506	169aa	ENSP00000437246.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5B2Z5 B5B2Z6 Q7Z596	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000527070.1	NOD2-002	1707	35aa	ENSP00000435149.1	Nonsense mediated decay		E9PLF7	-	-
ENST00000534067.1	NOD2-006	602	60aa	ENSP00000463145.1	Nonsense mediated decay		B5B2Z5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000529633.1	NOD2-007	450	60aa	ENSP00000462443.1	Nonsense mediated decay		B5B2Z5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000524712.1	NOD2-008	366	60aa	ENSP00000464065.1	Nonsense mediated decay		B5B2Z5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000527052.1	NOD2-009	338	60aa	ENSP00000463423.1	Nonsense mediated decay		B5B2Z5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000526417.2	NOD2-003	1100	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532206.1	NOD2-005	878	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 4,486 bps, Translation length: 1,040 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9HC29

CCDS

This transcript is a member of the Human CCDS set: CCDS10746

Version

ENST00000300589.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000256876 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000300589.2 NOD2-001

Summary