Transcript: ACAN-001 ENST00000558207.1

Description

aggrecan [Source:HGNC Symbol;Acc:319]

Gene Synonyms

AGC1, AGCAN, CSPG1, CSPGCP, MSK16, SEDK

Location

Chromosome 15: 89,346,705-89,394,752 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 39 domains and features, is associated with 14276 variant alleles and maps to 380 oligo probes.

Gene

This transcript is a product of gene ENSG00000157766.11 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ACAN-201	ENST00000439576.2	8840	2530aa	ENSP00000387356.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53970	E7EX88 Q6LE94	NM_013227 NP_037359	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ACAN-006	ENST00000561243.1	7593	2530aa	ENSP00000453342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53970	E7EX88 Q6LE94	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ACAN-004	ENST00000352105.7	7526	2431aa	ENSP00000341615.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53971	E7ENV9	NM_001135 NP_001126	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ACAN-008	ENST00000559004.1	7628	2492aa	ENSP00000453499.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	H0YM81	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ACAN-001	ENST00000558207.1	4159	721aa	ENSP00000453003.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	Q6PID9	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ACAN-003	ENST00000558704.1	712	156aa	ENSP00000452682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ACAN-005	ENST00000560601.1	679	226aa	ENSP00000453581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	Q6LE94	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ACAN-002	ENST00000558604.1	749	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 4,159 bps, Translation length: 721 residues

Version

ENST00000558207.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000416265 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ACAN-001 ENST00000558207.1

Summary

Transcript-based displays