Transcript: AMT-010 ENST00000491800.2

Description

aminomethyltransferase [Source:HGNC Symbol;Acc:473]

Gene Synonyms

GCE, GCST, GCVT, NKH

Location

Chromosome 3: 49,455,635-49,456,838 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 473 variant alleles and maps to 325 oligo probes.

Gene

This transcript is a product of gene ENSG00000145020.10 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
AMT-003	ENST00000273588.3	2276	403aa	ENSP00000273588.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2797	B3KTU4 B4DGG9 P48728	NM_000481 NP_000472	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
AMT-202	ENST00000538581.1	2033	347aa	ENSP00000443200.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54583	B4DGG9 C9JXJ4 P48728	NM_001164711 NP_001158183	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
AMT-201	ENST00000395338.2	1955	386aa	ENSP00000378747.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54585	P48728	NM_001164712 NP_001158184	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
AMT-006	ENST00000458307.2	1860	359aa	ENSP00000415619.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54584	P48728	NM_001164710 NP_001158182	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
AMT-005	ENST00000427987.1	1719	384aa	ENSP00000403821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
AMT-203	ENST00000546031.1	1123	306aa	ENSP00000440672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	B4DGG9	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
AMT-013	ENST00000430521.1	811	262aa	ENSP00000388068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	C9JXJ4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
AMT-008	ENST00000399379.2	1123	39aa	ENSP00000399943.1	Nonsense mediated decay	-	F8WF62	-	-
AMT-002	ENST00000476226.1	2038	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	NR_028435	-
AMT-018	ENST00000480957.1	850	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
AMT-015	ENST00000487589.1	780	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
AMT-017	ENST00000485108.1	592	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
AMT-016	ENST00000493046.1	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
AMT-020	ENST00000462048.1	529	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
AMT-004	ENST00000465925.1	3272	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
AMT-011	ENST00000476127.1	1111	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
AMT-009	ENST00000478594.1	1052	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
AMT-014	ENST00000461210.1	850	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
AMT-007	ENST00000495436.1	843	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
AMT-021	ENST00000498571.1	619	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
AMT-010	ENST00000491800.2	462	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
AMT-019	ENST00000476828.1	461	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
AMT-012	ENST00000473163.1	440	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 462 bps,

Version

ENST00000491800.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000346270 (version 2)

Annotation Attributes

low sequence quality [Definitions]

Favourite species

All species

Recent locations

Transcript: AMT-010 ENST00000491800.2

Summary

Transcript-based displays