Transcript: ENST00000240185.3 TARDBP-001

Description

TAR DNA binding protein [Source:HGNC Symbol;Acc:11571]

Gene Synonyms

ALS10, TDP-43, TDP43

Location

Chromosome 1: 11,072,699-11,084,100 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 16 domains and features, is associated with 5986 variant alleles and maps to 814 oligo probes.

Gene

This transcript is a product of gene ENSG00000120948.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000240185.3	TARDBP-001	2748	414aa	ENSP00000240185.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS122	K7EJM5 Q13148	NM_007375.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000315091.3	TARDBP-003	1835	295aa	ENSP00000313129.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AKP7 K7EJM5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439080.2	TARDBP-201	1357	298aa	ENSP00000404666.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJ45	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000476201.1	TARDBP-005	767	222aa	ENSP00000466842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EN94	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000473118.1	TARDBP-004	688	201aa	ENSP00000465240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJM5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000473869.1	TARDBP-002	1946	298aa	ENSP00000432132.1	Nonsense mediated decay		G3V162 K7EJM5	-	-
ENST00000472476.1	TARDBP-006	929	80aa	ENSP00000465080.1	Nonsense mediated decay		K7EJ99	-	-
ENST00000496840.1	TARDBP-008	692	16aa	ENSP00000467020.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477447.2	TARDBP-007	311	65aa	ENSP00000465888.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000480464.1	TARDBP-009	491	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,748 bps, Translation length: 414 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13148

CCDS

This transcript is a member of the Human CCDS set: CCDS122

Version

ENST00000240185.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000006063 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000240185.3 TARDBP-001

Summary