Transcript: ENST00000542898.1 MEFV-008

Description

Mediterranean fever [Source:HGNC Symbol;Acc:6998]

Gene Synonyms

FMF, MEF, TRIM20

Location

Chromosome 16: 3,292,028-3,306,627 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 16 domains and features, is associated with 6499 variant alleles and maps to 366 oligo probes.

Gene

This transcript is a product of gene ENSG00000103313.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000219596.1	MEFV-001	3499	781aa	ENSP00000219596.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10498	O15553	NM_000243.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000339854.4	MEFV-010	2959	601aa	ENSP00000339639.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W6Z2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541159.1	MEFV-002	1888	445aa	ENSP00000438711.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55981	I4DSV7 O15553	NM_001198536.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000536379.1	MEFV-004	1713	570aa	ENSP00000445079.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I4DSV7 O15553	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542898.1	MEFV-008	3710	644aa	ENSP00000444615.1	Nonsense mediated decay		F5H595	-	-
ENST00000537682.1	MEFV-006	3617	613aa	ENSP00000438611.1	Nonsense mediated decay		F5H2E5	-	-
ENST00000538326.1	MEFV-007	3597	490aa	ENSP00000437486.1	Nonsense mediated decay		F5H6N9	-	-
ENST00000536980.1	MEFV-009	2984	402aa	ENSP00000444178.1	Nonsense mediated decay		F5GZV9 I4DSV7	-	-
ENST00000570511.1	MEFV-015	1751	306aa	ENSP00000458312.1	Nonsense mediated decay		I3L0S7	-	-
ENST00000539145.1	MEFV-003	1267	95aa	ENSP00000444471.1	Nonsense mediated decay		D2DTW1	-	-
ENST00000576315.1	MEFV-013	1151	95aa	ENSP00000460551.1	Nonsense mediated decay		D2DTW1	-	-
ENST00000574583.1	MEFV-014	1118	95aa	ENSP00000460269.1	Nonsense mediated decay		D2DTW1	-	-
ENST00000572244.1	MEFV-012	1036	101aa	ENSP00000461186.1	Nonsense mediated decay		E3P8H6	-	-
ENST00000539154.1	MEFV-005	1090	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 9, Transcript length: 3,710 bps, Translation length: 644 residues

Version

ENST00000542898.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000398512 (version 1)

Annotation Attributes

non-submitted evidence [Definitions]

Favourite species

All species

Recent locations

Transcript: ENST00000542898.1 MEFV-008

Summary