Transcript: AMPH-003 ENST00000441628.1

Description

amphiphysin [Source:HGNC Symbol;Acc:471]

Gene Synonyms

AMPH1

Location

Chromosome 7: 38,424,419-38,502,713 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 17 domains and features, is associated with 20315 variant alleles and maps to 398 oligo probes.

Gene

This transcript is a product of gene ENSG00000078053.12 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
AMPH-001	ENST00000356264.2	3418	695aa	ENSP00000348602.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5456	P49418 Q9UQI2 Q9UQI3 Q9UQI4 Q9UQI5	NM_001635 NP_001626	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
AMPH-002	ENST00000325590.5	3145	653aa	ENSP00000317441.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47574	P49418 Q9UQI2 Q9UQI3 Q9UQI5	NM_139316 NP_647477	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
AMPH-201	ENST00000428293.2	3143	653aa	ENSP00000390734.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	F5H533 Q9UQI2 Q9UQI3 Q9UQI5	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
AMPH-003	ENST00000441628.1	1735	578aa	ENSP00000415085.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	Q9UQI3 Q9UQI5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
AMPH-006	ENST00000450124.1	665	112aa	ENSP00000400404.1	Nonsense mediated decay	-	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
AMPH-004	ENST00000471913.1	1778	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
AMPH-005	ENST00000467580.1	866	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
AMPH-009	ENST00000460887.1	430	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
AMPH-007	ENST00000462072.1	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
AMPH-008	ENST00000475581.1	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,735 bps, Translation length: 578 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000441628.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000338409 (version 1)

Favourite species

All species

Recent locations

Transcript: AMPH-003 ENST00000441628.1

Summary

Transcript-based displays