Transcript: ACTN1-013 ENST00000553659.1

Description

actinin, alpha 1 [Source:HGNC Symbol;Acc:163]

Gene Synonyms

BDPLT15

Location

Chromosome 14: 69,392,276-69,444,986 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 6 domains and features, is associated with 12793 variant alleles and maps to 61 oligo probes.

Gene

This transcript is a product of gene ENSG00000072110.9 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ACTN1-001	ENST00000193403.6	3779	892aa	ENSP00000193403.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9792	G3V2E8 G3V2W4 G3V2X9 P12814 Q5ZEZ4	NM_001102 NP_001093	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ACTN1-005	ENST00000394419.4	3464	914aa	ENSP00000377941.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45130	G3V2E8 G3V2W4 G3V2X9 P12814 Q5ZEZ4	NM_001130004 NP_001123476	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ACTN1-002	ENST00000438964.2	3043	887aa	ENSP00000414272.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45129	G3V2E8 G3V2W4 G3V2X9 H9KV75 P12814	NM_001130005 NP_001123477	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ACTN1-007	ENST00000376839.3	2824	822aa	ENSP00000366035.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	G3V2E8 G3V2W4 G3V2X9 H9KV75	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ACTN1-006	ENST00000538545.2	2813	930aa	ENSP00000439828.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	G3V2E8 G3V2W4 G3V2X9 P12814	-	The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic,
ACTN1-011	ENST00000556433.1	1259	260aa	ENSP00000450764.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	B4DRP5 G3V2E8 G3V2N5 G3V2X9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ACTN1-012	ENST00000555616.1	919	238aa	ENSP00000450903.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	G3V2E8 G3V2W4 G3V2X9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ACTN1-019	ENST00000544964.2	891	297aa	ENSP00000444422.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	H7C5W8 Q5ZEZ4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ACTN1-022	ENST00000555075.1	828	251aa	ENSP00000452254.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ACTN1-020	ENST00000553290.1	619	207aa	ENSP00000450625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	Q5ZEZ4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ACTN1-015	ENST00000553370.1	605	144aa	ENSP00000450925.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	G3V2E8 G3V2X9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ACTN1-014	ENST00000556571.1	568	126aa	ENSP00000452423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	G3V5M4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ACTN1-016	ENST00000553779.1	530	85aa	ENSP00000450618.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	G3V2E8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ACTN1-013	ENST00000553659.1	434	72aa	ENSP00000451086.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	G3V380	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ACTN1-018	ENST00000554508.1	585	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
ACTN1-017	ENST00000554158.1	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
ACTN1-010	ENST00000556203.1	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
ACTN1-021	ENST00000556343.1	274	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-	-
ACTN1-008	ENST00000556083.1	4674	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
ACTN1-009	ENST00000553882.1	2636	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-
ACTN1-023	ENST00000556432.1	558	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 434 bps, Translation length: 72 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000553659.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000414671 (version 1)

Favourite species

All species

Recent locations

Transcript: ACTN1-013 ENST00000553659.1

Summary

Transcript-based displays