Transcript: ENST00000396344.4 HOXA10-003

Description

homeobox A10 [Source:HGNC Symbol;Acc:5100]

Gene Synonyms

HOX1, HOX1.8, HOX1H, PL

Location

About this transcript

This transcript has 2 exons, is annotated with 12 domains and features, is associated with 5123 variant alleles and maps to 356 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000283921.4	HOXA10-001	2541	410aa	ENSP00000283921.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5410	P31260	NM_018951.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396344.4	HOXA10-003	1570	94aa	ENSP00000379633.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P31260	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521421.1	HOXA10-005	1187	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524368.1	HOXA10-004	942	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519593.1	HOXA10-006	723	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,570 bps, Translation length: 94 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P31260

Version

ENST00000396344.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000358725 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.