Transcript: ENST00000488325.1 HLA-DOB-003

Description

major histocompatibility complex, class II, DO beta [Source:HGNC Symbol;Acc:4937]

Gene Synonyms

DOB

Location

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 1851 variant alleles and maps to 1093 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000438763.2	HLA-DOB-001	1372	273aa	ENSP00000390020.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4754	P13765 Q5QNS2	NM_002120.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447394.1	HLA-DOB-004	543	181aa	ENSP00000394860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000488325.1	HLA-DOB-003	1188	38aa	ENSP00000436618.1	Nonsense mediated decay		E9PI00	-	-
ENST00000475235.1	HLA-DOB-002	1514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 1,188 bps, Translation length: 38 residues

Version

ENST00000488325.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000076440 (version 3)