Transcript: ENST00000438763.2 HLA-DOB-001

Description

major histocompatibility complex, class II, DO beta [Source:HGNC Symbol;Acc:4937]

Gene Synonyms

DOB

Location

About this transcript

This transcript has 6 exons, is annotated with 15 domains and features, is associated with 1884 variant alleles and maps to 1112 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000438763.2	HLA-DOB-001	1372	273aa	ENSP00000390020.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4754	P13765 Q5QNS2	NM_002120.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447394.1	HLA-DOB-004	543	181aa	ENSP00000394860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000488325.1	HLA-DOB-003	1188	38aa	ENSP00000436618.1	Nonsense mediated decay		E9PI00	-	-
ENST00000475235.1	HLA-DOB-002	1514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,372 bps, Translation length: 273 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P13765

CCDS

This transcript is a member of the Human CCDS set: CCDS4754

Version

ENST00000438763.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000076439 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.