Transcript: ENST00000333972.7 ARHGEF25-003

Description

Rho guanine nucleotide exchange factor (GEF) 25 [Source:HGNC Symbol;Acc:30275]

Gene Synonyms

GEFT, p63RhoGEF

Location

Chromosome 12: 58,003,963-58,011,026 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 16 domains and features, is associated with 3917 variant alleles and maps to 543 oligo probes.

Gene

This transcript is a product of gene ENSG00000240771.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000333972.7	ARHGEF25-003	2246	619aa	ENSP00000335560.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44931	Q86VW2	NM_001111270.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000286494.4	ARHGEF25-001	2552	580aa	ENSP00000286494.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8947	Q86VW2	NM_182947.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000477314.1	ARHGEF25-002	687	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471370.1	ARHGEF25-004	1945	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469072.1	ARHGEF25-007	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466399.1	ARHGEF25-008	593	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484357.1	ARHGEF25-009	274	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,246 bps, Translation length: 619 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86VW2

CCDS

This transcript is a member of the Human CCDS set: CCDS44931

Version

ENST00000333972.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000326566 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000333972.7 ARHGEF25-003

Summary