Transcript: ENST00000561178.1 PPP1R3E-007

Description

protein phosphatase 1, regulatory subunit 3E [Source:HGNC Symbol;Acc:14943]

Gene Synonyms

FLJ00089

Location

Chromosome 14: 23,767,508-23,770,149 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1250 variant alleles and maps to 338 oligo probes.

Gene

This transcript is a product of gene ENSG00000235194.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000452015.4	PPP1R3E-001	4773	279aa	ENSP00000408288.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61403	H0YM26 H0YMB9 Q9H7J1	NM_001276318.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558058.1	PPP1R3E-002	3222	49aa	ENSP00000453175.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM26 H0YMB9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000559314.1	PPP1R3E-003	2351	34aa	ENSP00000454106.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM26 H0YMB9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000559942.1	PPP1R3E-004	1187	18aa	ENSP00000453437.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM26	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000560913.1	PPP1R3E-008	932	29aa	ENSP00000453543.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM26 H0YMB9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561437.1	PPP1R3E-009	690	13aa	ENSP00000453726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561426.1	PPP1R3E-010	458	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000560073.1	PPP1R3E-005	444	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000561178.1	PPP1R3E-007	1594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,594 bps,

Version

ENST00000561178.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000416889 (version 1)

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Transcript: ENST00000561178.1 PPP1R3E-007

Summary