Transcript: ENST00000543193.1 PGA4-005

Description

pepsinogen 4, group I (pepsinogen A) [Source:HGNC Symbol;Acc:8886]

Gene Synonyms

PGA3, PGA4, PGA5

Location

Chromosome 11: 60,989,823-60,990,885 forward strand.

About this transcript

This transcript has 2 exons, is associated with 7 variant alleles and maps to 157 oligo probes.

Gene

This transcript is a product of gene ENSG00000229183.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378149.3	PGA4-001	1748	388aa	ENSP00000367391.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31575	F5H0H6 F5H7H3 F5H842 P0DJD7	NM_001079808.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000422676.2	PGA4-201	1398	388aa	ENSP00000395402.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GWT0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544899.1	PGA4-011	867	128aa	ENSP00000443623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0H6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537932.1	PGA4-010	840	234aa	ENSP00000442757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXL4 F5H0H6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545726.1	PGA4-006	755	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000539581.1	PGA4-009	642	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000543193.1	PGA4-005	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541743.1	PGA4-007	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 577 bps,

Version

ENST00000543193.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000397963 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000543193.1 PGA4-005

Summary