Transcript: ENST00000489638.1 LTA-003

Description

lymphotoxin alpha [Source:HGNC Symbol;Acc:6709]

Gene Synonyms

LT, TNFB, TNFSF1

Location

About this transcript

This transcript has 3 exons, is associated with 940 variant alleles and maps to 1408 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000454783.1	LTA-002	1507	205aa	ENSP00000403495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4701	P01374 Q45NE9 Q5STV3 Q6WQV6	NM_001159740.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000418386.2	LTA-001	1422	205aa	ENSP00000413450.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4701	P01374 Q45NE9 Q5STV3 Q6WQV6	NM_000595.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000471842.1	LTA-004	1497	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489638.1	LTA-003	1377	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,377 bps,

Version

ENST00000489638.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000259098 (version 1)