Transcript: ENST00000400159.2 MYL5-001

Description

myosin, light chain 5, regulatory [Source:HGNC Symbol;Acc:7586]

Location

Chromosome 4: 671,711-675,822 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 12 domains and features, is associated with 3236 variant alleles and maps to 278 oligo probes.

Gene

This transcript is a product of gene ENSG00000215375.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000400159.2	MYL5-001	666	173aa	ENSP00000383023.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43197	Q02045	NM_002477.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000506838.1	MYL5-002	2956	132aa	ENSP00000427153.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q02045	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507804.1	MYL5-008	829	126aa	ENSP00000427317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RJ91	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511290.1	MYL5-004	781	132aa	ENSP00000425162.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q02045	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505477.1	MYL5-009	584	132aa	ENSP00000423118.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q02045	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503300.1	MYL5-003	1780	64aa	ENSP00000424528.1	Nonsense mediated decay		D6RB15	-	-
ENST00000513662.1	MYL5-007	731	105aa	ENSP00000423053.1	Nonsense mediated decay		D6RA88 D6RB15	-	-
ENST00000502720.1	MYL5-005	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503612.1	MYL5-006	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 666 bps, Translation length: 173 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q02045

CCDS

This transcript is a member of the Human CCDS set: CCDS43197

Version

ENST00000400159.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000358570 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000400159.2 MYL5-001

Summary