Transcript: ENST00000352940.4 DDX47-002

Description

DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Source:HGNC Symbol;Acc:18682]

Gene Synonyms

DKFZp564O176, E4-DBP, FLJ30012, HQ0256, MSTP162, RRP3

Location

Chromosome 12: 12,966,250-12,982,913 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 14 domains and features, is associated with 7270 variant alleles and maps to 398 oligo probes.

Gene

This transcript is a product of gene ENSG00000213782.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358007.3	DDX47-001	1817	455aa	ENSP00000350698.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8655	A4UCU0 Q7Z4B1 Q9H0S4	NM_016355.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000352940.4	DDX47-002	1698	406aa	ENSP00000319578.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8656	A4UCU0 Q9H0S4	NM_201224.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544400.1	DDX47-009	597	196aa	ENSP00000444000.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H1N9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000392155.2	DDX47-010	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000542832.1	DDX47-011	554	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000542123.1	DDX47-006	2689	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545038.1	DDX47-005	2357	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541537.1	DDX47-003	1517	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000544032.1	DDX47-004	1044	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000544497.1	DDX47-008	628	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535722.1	DDX47-012	586	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000426619.2	DDX47-007	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,698 bps, Translation length: 406 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H0S4

CCDS

This transcript is a member of the Human CCDS set: CCDS8656

Version

ENST00000352940.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000400671 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000352940.4 DDX47-002

Summary